PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf00119g01222.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family C3H
Protein Properties Length: 216aa    MW: 24820.1 Da    PI: 8.0952
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf00119g01222.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH38.91.4e-1298123126
                               --S---SGGGGTS--TTTTT-SS-SS CS
                   zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                               y   +C+++ +tG+C yGd+CkF+H+
  Peaxi162Scf00119g01222.1  98 YQPDICKDYKETGYCGYGDSCKFMHD 123
                               67789********************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902296.67E-1096130IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.87897125IPR000571Zinc finger, CCCH-type
SMARTSM003561.1E-797124IPR000571Zinc finger, CCCH-type
PfamPF006422.6E-1098123IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.1E-1398128IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:3.30.40.104.8E-12156210IPR013083Zinc finger, RING/FYVE/PHD-type
PfamPF139202.9E-8169211No hitNo description
SuperFamilySSF578503.53E-11169211No hitNo description
PROSITE profilePS500899.996170208IPR001841Zinc finger, RING-type
CDDcd001621.13E-6170211No hitNo description
SMARTSM001840.0038170207IPR001841Zinc finger, RING-type
PROSITE patternPS005180185194IPR017907Zinc finger, RING-type, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 216 aa     Download sequence    Send to blast
MKIQVQTDNR ATASLETESE FSKDARAIRE KALKLVEEAL KGKTKTGGGE KLYKGMNQYI  60
DYQAGLRREH TISSEKAGGA HGPLRASAHI RVSARFDYQP DICKDYKETG YCGYGDSCKF  120
MHDRGDYKSW WQLEKEWDEA EKRRKRKLAM GMLEEDDKEA ENDDALPFAC FTCREPFVDP  180
VVTKCKHYFC EHCALKHHAK NKKCFVCNQP TLGIFN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2csy_A3e-181662161464Zinc finger protein 183-like 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1140147EKRRKRKL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2265101e-150AC226510.1 Solanum lycopersicum cultivar Heinz 1706 chromosome 2 clone C02HBa0172H10, complete sequence.
GenBankHG9755141e-150HG975514.1 Solanum lycopersicum chromosome ch02, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009609000.11e-146PREDICTED: zinc finger CCCH domain-containing protein 1-like
RefseqXP_016502602.11e-146PREDICTED: zinc finger CCCH domain-containing protein 1-like
SwissprotQ8GX841e-121C3H1_ARATH; Zinc finger CCCH domain-containing protein 1
TrEMBLM1B2E51e-141M1B2E5_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000355221e-140(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA44032337
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01350.11e-112C3H family protein